HL_9C3H_038

3D structure

PDB id

9C3H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the CNOT3-bound human 80S ribosome with tRNA-ARG in the P-site.

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

GUUCGCC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9C3H_038 not in the Motif Atlas

Geometric match to HL_4V9F_039

Geometric discrepancy: 0.3589

The information below is about HL_4V9F_039

Detailed Annotation

Other HL

Broad Annotation

Other HL

Motif group

HL_67772.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

13

Unit IDs

9C3H|1|L5|G|2664
9C3H|1|L5|U|2665
9C3H|1|L5|U|2666
9C3H|1|L5|C|2667
9C3H|1|L5|G|2668
9C3H|1|L5|C|2669
9C3H|1|L5|C|2670

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LR

Large ribosomal subunit protein eL19

Chain Lc

Large ribosomal subunit protein eL30

Chain Lp

Large ribosomal subunit protein eL43