HL_9C3H_043

3D structure

PDB id

9C3H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the CNOT3-bound human 80S ribosome with tRNA-ARG in the P-site.

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

CUUC(OMG)G

Length

6 nucleotides

Bulged bases

9C3H|1|L5|U|2874

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9C3H_043 not in the Motif Atlas

Homologous match to HL_8C3A_043

Geometric discrepancy: 0.0523

The information below is about HL_8C3A_043

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

9C3H|1|L5|C|2872
9C3H|1|L5|U|2873
9C3H|1|L5|U|2874
9C3H|1|L5|C|2875
9C3H|1|L5|OMG|2876
9C3H|1|L5|G|2877

Current chains

Chain L5

28S rRNA

Nearby chains

Chain Lp

Large ribosomal subunit protein eL43

Chain S2

Small subunit ribosomal RNA; SSU rRNA

Chain So

Small ribosomal subunit protein eS32