HL_9C3H_053

3D structure

PDB id

9C3H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the CNOT3-bound human 80S ribosome with tRNA-ARG in the P-site.

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

UCAAACGGUA(6MZ)CG

Length

13 nucleotides

Bulged bases

9C3H|1|L5|A|4214, 9C3H|1|L5|C|4221

QA status

Modified nucleotides: 6MZ

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9C3H_053 not in the Motif Atlas

Homologous match to HL_8P9A_166

Geometric discrepancy: 0.1138

The information below is about HL_8P9A_166

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02042.1

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

12

Unit IDs

9C3H|1|L5|U|4210
9C3H|1|L5|C|4211
9C3H|1|L5|A|4212
9C3H|1|L5|A|4213
9C3H|1|L5|A|4214
9C3H|1|L5|C|4215
9C3H|1|L5|G|4216
9C3H|1|L5|G|4217
9C3H|1|L5|U|4218
9C3H|1|L5|A|4219
9C3H|1|L5|6MZ|4220
9C3H|1|L5|C|4221
9C3H|1|L5|G|4222

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LT

Large ribosomal subunit protein eL21

Chain Lb

Large ribosomal subunit protein eL29

Chain Lz

Large ribosomal subunit protein uL16