HL_9C3H_056

3D structure

PDB id

9C3H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the CNOT3-bound human 80S ribosome with tRNA-ARG in the P-site.

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

UUCAG(OMU)ACG

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9C3H_056 not in the Motif Atlas

Homologous match to HL_8C3A_059

Geometric discrepancy: 0.1889

The information below is about HL_8C3A_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34636.1

Basepair signature

cWW-cWW-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

9C3H|1|L5|U|4301
9C3H|1|L5|U|4302
9C3H|1|L5|C|4303
9C3H|1|L5|A|4304
9C3H|1|L5|G|4305
9C3H|1|L5|OMU|4306
9C3H|1|L5|A|4307
9C3H|1|L5|C|4308
9C3H|1|L5|G|4309

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LT

Large ribosomal subunit protein eL21

Chain La

Large ribosomal subunit protein uL15

Chain Le

Large ribosomal subunit protein eL42

Chain Lj

Large ribosomal subunit protein eL18