HL_9C3H_060

3D structure

PDB id

9C3H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the CNOT3-bound human 80S ribosome with tRNA-ARG in the P-site.

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

AGCAGAAU

Length

8 nucleotides

Bulged bases

9C3H|1|L5|G|4475

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9C3H_060 not in the Motif Atlas

Homologous match to HL_8P9A_173

Geometric discrepancy: 0.0807

The information below is about HL_8P9A_173

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_46665.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

9C3H|1|L5|A|4474
9C3H|1|L5|G|4475
9C3H|1|L5|C|4476
9C3H|1|L5|A|4477
9C3H|1|L5|G|4478
9C3H|1|L5|A|4479
9C3H|1|L5|A|4480
9C3H|1|L5|U|4481

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LH

Large ribosomal subunit protein uL6

Chain Lo

Large ribosomal subunit protein eL40