HL_9C3H_068

3D structure

PDB id

9C3H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the CNOT3-bound human 80S ribosome with tRNA-ARG in the P-site.

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

CUCCCUCG

Length

8 nucleotides

Bulged bases

9C3H|1|L5|C|5023, 9C3H|1|L5|C|5024

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9C3H_068 not in the Motif Atlas

Geometric match to HL_8C3A_054

Geometric discrepancy: 0.2748

The information below is about HL_8C3A_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

9C3H|1|L5|C|5021
9C3H|1|L5|U|5022
9C3H|1|L5|C|5023
9C3H|1|L5|C|5024
9C3H|1|L5|C|5025
9C3H|1|L5|U|5026
9C3H|1|L5|C|5027
9C3H|1|L5|G|5028

Current chains

Chain L5

28S rRNA

Nearby chains

Chain Lm

Large ribosomal subunit protein eL22

Chain SI

Small ribosomal subunit protein eS8