HL_9C3H_081

3D structure

PDB id

9C3H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the CNOT3-bound human 80S ribosome with tRNA-ARG in the P-site.

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

(OMC)CAAGG

Length

6 nucleotides

Bulged bases

9C3H|1|S2|A|464

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9C3H_081 not in the Motif Atlas

Homologous match to HL_8C3A_202

Geometric discrepancy: 0.1453

The information below is about HL_8C3A_202

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.3

Basepair signature

cWW-tSW-F

Number of instances in this motif group

54

Unit IDs

9C3H|1|S2|OMC|462
9C3H|1|S2|C|463
9C3H|1|S2|A|464
9C3H|1|S2|A|465
9C3H|1|S2|G|466
9C3H|1|S2|G|467

Current chains

Chain S2

18S rRNA

Nearby chains

Chain LV

Large ribosomal subunit protein uL14

Chain SG

Small ribosomal subunit protein eS6