HL_9C3H_087

3D structure

PDB id

9C3H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the CNOT3-bound human 80S ribosome with tRNA-ARG in the P-site.

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

CCGAG

Length

5 nucleotides

Bulged bases

9C3H|1|S2|C|835

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9C3H_087 not in the Motif Atlas

Geometric match to HL_8VTW_051

Geometric discrepancy: 0.2524

The information below is about HL_8VTW_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_86929.1

Basepair signature

cWW-F

Number of instances in this motif group

9

Unit IDs

9C3H|1|S2|C|834
9C3H|1|S2|C|835
9C3H|1|S2|G|836
9C3H|1|S2|A|837
9C3H|1|S2|G|838

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SY

Isoform 3 of Small ribosomal subunit protein eS24