HL_9C3H_092

3D structure

PDB id

9C3H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the CNOT3-bound human 80S ribosome with tRNA-ARG in the P-site.

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

UUCCCA

Length

6 nucleotides

Bulged bases

9C3H|1|S2|U|1115

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9C3H_092 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.1563

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

9C3H|1|S2|U|1114
9C3H|1|S2|U|1115
9C3H|1|S2|C|1116
9C3H|1|S2|C|1117
9C3H|1|S2|C|1118
9C3H|1|S2|A|1119

Current chains

Chain S2

18S rRNA

Nearby chains

Chain S1

Small ribosomal subunit protein eS1

Chain Sb

Small ribosomal subunit protein eS27