HL_9C3H_098

3D structure

PDB id

9C3H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the CNOT3-bound human 80S ribosome with tRNA-ARG in the P-site.

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

G(PSU)UAAUUC

Length

8 nucleotides

Bulged bases

9C3H|1|S2|U|1371

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9C3H_098 not in the Motif Atlas

Homologous match to HL_8P9A_218

Geometric discrepancy: 0.128

The information below is about HL_8P9A_218

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_63894.2

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

19

Unit IDs

9C3H|1|S2|G|1366
9C3H|1|S2|PSU|1367
9C3H|1|S2|U|1368
9C3H|1|S2|A|1369
9C3H|1|S2|A|1370
9C3H|1|S2|U|1371
9C3H|1|S2|U|1372
9C3H|1|S2|C|1373

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SS

Small ribosomal subunit protein eS17