HL_9C3H_100

3D structure

PDB id

9C3H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the CNOT3-bound human 80S ribosome with tRNA-ARG in the P-site.

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

CGUUCAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9C3H_100 not in the Motif Atlas

Homologous match to HL_8C3A_222

Geometric discrepancy: 0.1975

The information below is about HL_8C3A_222

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37369.1

Basepair signature

cWW-tSH-F-F-F

Number of instances in this motif group

8

Unit IDs

9C3H|1|S2|C|1460
9C3H|1|S2|G|1461
9C3H|1|S2|U|1462
9C3H|1|S2|U|1463
9C3H|1|S2|C|1464
9C3H|1|S2|A|1465
9C3H|1|S2|G|1466

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SS

Small ribosomal subunit protein eS17