HL_9C3H_106
3D structure
- PDB id
- 9C3H (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the CNOT3-bound human 80S ribosome with tRNA-ARG in the P-site.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2 Å
Loop
- Sequence
- AUUCCG(1MG)AU
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: 1MG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9C3H_106 not in the Motif Atlas
- Homologous match to HL_4WZD_238
- Geometric discrepancy: 0.1085
- The information below is about HL_4WZD_238
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_06059.3
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 46
Unit IDs
9C3H|1|S4|A|31
9C3H|1|S4|U|32
9C3H|1|S4|U|33
9C3H|1|S4|C|34
9C3H|1|S4|C|35
9C3H|1|S4|G|36
9C3H|1|S4|1MG|37
9C3H|1|S4|A|38
9C3H|1|S4|U|39
Current chains
- Chain S4
- tRNA-ARG,CCG-1
Nearby chains
- Chain L5
- Large subunit ribosomal RNA; LSU rRNA
- Chain S2
- Small subunit ribosomal RNA; SSU rRNA
- Chain S5
- mRNA
- Chain SB
- CCR4-NOT transcription complex subunit 3
- Chain SP
- Small ribosomal subunit protein uS19
- Chain SQ
- Small ribosomal subunit protein uS9
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