HL_9C6J_007

3D structure

PDB id

9C6J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Group IIC intron embedded with the TPP riboswitch

Experimental method

ELECTRON MICROSCOPY

Resolution

2.41 Å

Loop

Sequence

GUUCGC

Length

6 nucleotides

Bulged bases

9C6J|1|A|U|340

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9C6J_007 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.3361

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

9C6J|1|A|G|338
9C6J|1|A|U|339
9C6J|1|A|U|340
9C6J|1|A|C|341
9C6J|1|A|G|342
9C6J|1|A|C|343

Current chains

Chain A

Group IIC intron embedded with the TPP riboswitch

Nearby chains