HL_9C8K_008
3D structure
- PDB id
- 9C8K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit Hemorrhagic Disease Virus reinitiation stimulating TURBS RNA bound to rabbit ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CCUGAGAAACGG
- Length
- 12 nucleotides
- Bulged bases
- 9C8K|1|1|C|450, 9C8K|1|1|G|451
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9C8K_008 not in the Motif Atlas
- Homologous match to HL_8C3A_201
- Geometric discrepancy: 0.1817
- The information below is about HL_8C3A_201
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_06226.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
9C8K|1|1|C|441
9C8K|1|1|C|442
9C8K|1|1|U|443
9C8K|1|1|G|444
9C8K|1|1|A|445
9C8K|1|1|G|446
9C8K|1|1|A|447
9C8K|1|1|A|448
9C8K|1|1|A|449
9C8K|1|1|C|450
9C8K|1|1|G|451
9C8K|1|1|G|452
Current chains
- Chain 1
- 18S ribosomal RNA
Nearby chains
- Chain E
- 40S ribosomal protein eS4
- Chain G
- eS6
- Chain I
- eS8
- Chain Y
- Small ribosomal subunit protein eS24
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