HL_9CG6_021

3D structure

PDB id

9CG6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex (tRNA-fMet M1 + GUG start codon)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.61 Å

Loop

Sequence

CCUUCGGG

Length

8 nucleotides

Bulged bases

9CG6|1|A|U|1030, 9CG6|1|A|C|1031

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9CG6_021 not in the Motif Atlas

Geometric match to HL_6VMY_004

Geometric discrepancy: 0.3927

The information below is about HL_6VMY_004

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_51020.2

Basepair signature

cWW-cSW-F

Number of instances in this motif group

14

Unit IDs

9CG6|1|A|C|1027
9CG6|1|A|C|1028
9CG6|1|A|U|1029
9CG6|1|A|U|1030
9CG6|1|A|C|1031
9CG6|1|A|G|1032
9CG6|1|A|G|1033
9CG6|1|A|G|1034

Current chains

Chain A

16S ribosomal RNA

Nearby chains