HL_9CG6_045

3D structure

PDB id

9CG6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex (tRNA-fMet M1 + GUG start codon)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.61 Å

Loop

Sequence

ACACGUGGUAU

Length

11 nucleotides

Bulged bases

9CG6|1|a|G|386

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9CG6_045 not in the Motif Atlas

Homologous match to HL_5J7L_145

Geometric discrepancy: 0.0743

The information below is about HL_5J7L_145

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

9CG6|1|a|A|382
9CG6|1|a|C|383
9CG6|1|a|A|384
9CG6|1|a|C|385
9CG6|1|a|G|386
9CG6|1|a|U|387
9CG6|1|a|G|388
9CG6|1|a|G|389
9CG6|1|a|U|390
9CG6|1|a|A|391
9CG6|1|a|U|392

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain w

50S ribosomal protein L28