HL_9CL9_034

3D structure

PDB id

9CL9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

WT 12C IM fraction, B-b3 with RluB bound

Experimental method

ELECTRON MICROSCOPY

Resolution

5.04 Å

Loop

Sequence

UGUGUUUCGACACA

Length

14 nucleotides

Bulged bases

9CL9|1|CA|U|138, 9CL9|1|CA|C|140, 9CL9|1|CA|G|141

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9CL9_034 not in the Motif Atlas

Geometric match to HL_5TBW_226

Geometric discrepancy: 0.3968

The information below is about HL_5TBW_226

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_59342.2

Basepair signature

cWW-F-F-F-F-cWW-F-F

Number of instances in this motif group

5

Unit IDs

9CL9|1|CA|U|133
9CL9|1|CA|G|134
9CL9|1|CA|U|135
9CL9|1|CA|G|136
9CL9|1|CA|U|137
9CL9|1|CA|U|138
9CL9|1|CA|U|139
9CL9|1|CA|C|140
9CL9|1|CA|G|141
9CL9|1|CA|A|142
9CL9|1|CA|C|143
9CL9|1|CA|A|144
9CL9|1|CA|C|145
9CL9|1|CA|A|146

Current chains

Chain CA

23S rRNA

Nearby chains

Chain T

Large ribosomal subunit protein uL23