HL_9CPA_003

3D structure

PDB id

9CPA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a Mammalian DHX29-bound 43S Pre-initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

GAUCGAAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9CPA_003 not in the Motif Atlas

Geometric match to HL_5T5A_001

Geometric discrepancy: 0.3608

The information below is about HL_5T5A_001

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.3

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

135

Unit IDs

9CPA|1|1|G|53
9CPA|1|1|A|54
9CPA|1|1|U|55
9CPA|1|1|C|56
9CPA|1|1|G|57
9CPA|1|1|A|58
9CPA|1|1|A|59
9CPA|1|1|A|60
9CPA|1|1|C|61

Current chains

Chain 1

initiator methionylated tRNA

Nearby chains

Chain A

Eukaryotic translation initiation factor 2 subunit 1