HL_9CPA_009

3D structure

PDB id

9CPA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a Mammalian DHX29-bound 43S Pre-initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

GGUGACUC

Length

8 nucleotides

Bulged bases

9CPA|1|2|U|285

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9CPA_009 not in the Motif Atlas

Geometric match to HL_8CRE_196

Geometric discrepancy: 0.363

The information below is about HL_8CRE_196

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_67772.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

13

Unit IDs

9CPA|1|2|G|279
9CPA|1|2|G|280
9CPA|1|2|U|281
9CPA|1|2|G|282
9CPA|1|2|A|283
9CPA|1|2|C|284
9CPA|1|2|U|285
9CPA|1|2|C|286

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain G

40S ribosomal protein S4

Chain N

Ribosomal protein S11