HL_9CPA_016

3D structure

PDB id

9CPA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a Mammalian DHX29-bound 43S Pre-initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

UCUUUCGA

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9CPA_016 not in the Motif Atlas

Geometric match to HL_3RG5_006

Geometric discrepancy: 0.3966

The information below is about HL_3RG5_006

Detailed Annotation

tRNA anticodon loop

Broad Annotation

tRNA anticodon loop

Motif group

HL_87268.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

9CPA|1|2|U|528
9CPA|1|2|C|529
9CPA|1|2|U|530
9CPA|1|2|U|531
9CPA|1|2|U|532
9CPA|1|2|C|533
9CPA|1|2|G|534
9CPA|1|2|A|535

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain h

ATP-dependent RNA helicase DHX29