HL_9CPA_024

3D structure

PDB id

9CPA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a Mammalian DHX29-bound 43S Pre-initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

AGGUGAAAUU

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9CPA_024 not in the Motif Atlas

Geometric match to HL_8P9A_209

Geometric discrepancy: 0.1636

The information below is about HL_8P9A_209

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_38491.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

9CPA|1|2|A|953
9CPA|1|2|G|954
9CPA|1|2|G|955
9CPA|1|2|U|956
9CPA|1|2|G|957
9CPA|1|2|A|958
9CPA|1|2|A|959
9CPA|1|2|A|960
9CPA|1|2|U|961
9CPA|1|2|U|962

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain 0

Small ribosomal subunit protein uS11

Chain A

Eukaryotic translation initiation factor 2 subunit 1

Chain H

Small ribosomal subunit protein uS7