HL_9CPA_031

3D structure

PDB id

9CPA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a Mammalian DHX29-bound 43S Pre-initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

AUUGAUAGCU

Length

10 nucleotides

Bulged bases

9CPA|1|2|U|1296, 9CPA|1|2|G|1298

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9CPA_031 not in the Motif Atlas

Geometric match to HL_8CRE_217

Geometric discrepancy: 0.1846

The information below is about HL_8CRE_217

Detailed Annotation

GNRA wlth extra near cWW

Broad Annotation

GNRA wlth extra near cWW

Motif group

HL_45359.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

9CPA|1|2|A|1291
9CPA|1|2|U|1292
9CPA|1|2|U|1293
9CPA|1|2|G|1294
9CPA|1|2|A|1295
9CPA|1|2|U|1296
9CPA|1|2|A|1297
9CPA|1|2|G|1298
9CPA|1|2|C|1299
9CPA|1|2|U|1300

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain R

uS19

Chain e

eS29

Chain f

Ribosomal protein S27a