HL_9CPA_033

3D structure

PDB id

9CPA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a Mammalian DHX29-bound 43S Pre-initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

GUUAAUUC

Length

8 nucleotides

Bulged bases

9CPA|1|2|U|1367

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9CPA_033 not in the Motif Atlas

Geometric match to HL_8P9A_218

Geometric discrepancy: 0.1375

The information below is about HL_8P9A_218

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_63894.2

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

19

Unit IDs

9CPA|1|2|G|1362
9CPA|1|2|U|1363
9CPA|1|2|U|1364
9CPA|1|2|A|1365
9CPA|1|2|A|1366
9CPA|1|2|U|1367
9CPA|1|2|U|1368
9CPA|1|2|C|1369

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain F

Ribosomal protein S3

Chain T

eS17