HL_9CPA_036

3D structure

PDB id

9CPA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a Mammalian DHX29-bound 43S Pre-initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

CGGCAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9CPA_036 not in the Motif Atlas

Geometric match to HL_5J7L_190

Geometric discrepancy: 0.1441

The information below is about HL_5J7L_190

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

9CPA|1|2|C|1560
9CPA|1|2|G|1561
9CPA|1|2|G|1562
9CPA|1|2|C|1563
9CPA|1|2|A|1564
9CPA|1|2|G|1565

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain U

uS13

Chain V

eS19