HL_9CPA_037

3D structure

PDB id

9CPA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a Mammalian DHX29-bound 43S Pre-initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

AUUGCAAUUAUU

Length

12 nucleotides

Bulged bases

9CPA|1|2|U|1616, 9CPA|1|2|U|1617, 9CPA|1|2|A|1618

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9CPA_037 not in the Motif Atlas

Geometric match to HL_8P9A_222

Geometric discrepancy: 0.1528

The information below is about HL_8P9A_222

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50951.1

Basepair signature

cWW-F-F-tWH-F-F-F

Number of instances in this motif group

5

Unit IDs

9CPA|1|2|A|1609
9CPA|1|2|U|1610
9CPA|1|2|U|1611
9CPA|1|2|G|1612
9CPA|1|2|C|1613
9CPA|1|2|A|1614
9CPA|1|2|A|1615
9CPA|1|2|U|1616
9CPA|1|2|U|1617
9CPA|1|2|A|1618
9CPA|1|2|U|1619
9CPA|1|2|U|1620

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain R

uS19

Chain U

uS13

Chain e

eS29