HL_9CPA_038
3D structure
- PDB id
- 9CPA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a Mammalian DHX29-bound 43S Pre-initiation Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6 Å
Loop
- Sequence
- GUCAUAAGC
- Length
- 9 nucleotides
- Bulged bases
- 9CPA|1|2|G|1660
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9CPA_038 not in the Motif Atlas
- Homologous match to HL_9H3G_107
- Geometric discrepancy: 0.2692
- The information below is about HL_9H3G_107
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_25307.3
- Basepair signature
- cWW-tWH-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
9CPA|1|2|G|1653
9CPA|1|2|U|1654
9CPA|1|2|C|1655
9CPA|1|2|A|1656
9CPA|1|2|U|1657
9CPA|1|2|A|1658
9CPA|1|2|A|1659
9CPA|1|2|G|1660
9CPA|1|2|C|1661
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain S
- uS9
- Chain V
- eS19
- Chain W
- uS10
- Chain e
- eS29
Coloring options: