HL_9D0I_206

3D structure

PDB id

9D0I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with Se-cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.45A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.45 Å

Loop

Sequence

CAGCCUGGUAG

Length

11 nucleotides

Bulged bases

9D0I|1|2x|C|16, 9D0I|1|2x|G|18, 9D0I|1|2x|G|19, 9D0I|1|2x|U|20

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9D0I_206 not in the Motif Atlas

Geometric match to HL_6CFJ_106

Geometric discrepancy: 0.139

The information below is about HL_6CFJ_106

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_63054.2

Basepair signature

cWW-cWS-F-F-F-F

Number of instances in this motif group

10

Unit IDs

9D0I|1|2x|C|13
9D0I|1|2x|A|14
9D0I|1|2x|G|15
9D0I|1|2x|C|16
9D0I|1|2x|C|17
9D0I|1|2x|U|17|||A
9D0I|1|2x|G|18
9D0I|1|2x|G|19
9D0I|1|2x|U|20
9D0I|1|2x|A|21
9D0I|1|2x|G|22

Current chains

Chain 2x

P-site Aminoacylated fMet-tRNAmet

Nearby chains

Chain 2A

Large subunit ribosomal RNA; LSU rRNA

Chain 2G

50S ribosomal protein L5