HL_9D0J_049

3D structure

PDB id

9D0J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with BT-33, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

CCUCCGGG

Length

8 nucleotides

Bulged bases

9D0J|1|1A|C|2145, 9D0J|1|1A|C|2146

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9D0J_049 not in the Motif Atlas

Geometric match to HL_9E6Q_025

Geometric discrepancy: 0.391

The information below is about HL_9E6Q_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_92598.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

13

Unit IDs

9D0J|1|1A|C|2142
9D0J|1|1A|C|2143
9D0J|1|1A|U|2144
9D0J|1|1A|C|2145
9D0J|1|1A|C|2146
9D0J|1|1A|G|2147
9D0J|1|1A|G|2148
9D0J|1|1A|G|2149

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1k

30S ribosomal protein S11