HL_9D7S_126
3D structure
- PDB id
- 9D7S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with Api antimicrobial peptide, mRNA, A-site release factor 1, and deacylated P-site and E-site tRNAphe at 2.85A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.85 Å
Loop
- Sequence
- GGAUGCAAAC
- Length
- 10 nucleotides
- Bulged bases
- 9D7S|1|2A|U|747, 9D7S|1|2A|A|751, 9D7S|1|2A|A|752
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9D7S_126 not in the Motif Atlas
- Homologous match to HL_9DFE_021
- Geometric discrepancy: 0.077
- The information below is about HL_9DFE_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_88205.2
- Basepair signature
- cWW-cWS-tSW-F-F
- Number of instances in this motif group
- 7
Unit IDs
9D7S|1|2A|G|744
9D7S|1|2A|G|745
9D7S|1|2A|A|746
9D7S|1|2A|U|747
9D7S|1|2A|G|748
9D7S|1|2A|C|749
9D7S|1|2A|A|750
9D7S|1|2A|A|751
9D7S|1|2A|A|752
9D7S|1|2A|C|753
Current chains
- Chain 2A
- 23S Ribosomal RNA
Nearby chains
- Chain 25
- 50S ribosomal protein L32
- Chain 27
- 50S ribosomal protein L34
- Chain 2E
- 50S ribosomal protein L3
- Chain 2W
- 50S ribosomal protein L22
- Chain 2z
- Api Antimicrobial Peptide
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