HL_9D7T_126

3D structure

PDB id

9D7T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with Api137 antimicrobial peptide, mRNA, A-site release factor 1, and deacylated P-site and E-site tRNAphe at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GGAUGCAAAC

Length

10 nucleotides

Bulged bases

9D7T|1|2A|U|747, 9D7T|1|2A|A|751, 9D7T|1|2A|A|752

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9D7T_126 not in the Motif Atlas

Homologous match to HL_9DFE_021

Geometric discrepancy: 0.0802

The information below is about HL_9DFE_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50204.1

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

11

Unit IDs

9D7T|1|2A|G|744
9D7T|1|2A|G|745
9D7T|1|2A|A|746
9D7T|1|2A|U|747
9D7T|1|2A|G|748
9D7T|1|2A|C|749
9D7T|1|2A|A|750
9D7T|1|2A|A|751
9D7T|1|2A|A|752
9D7T|1|2A|C|753

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 25

50S ribosomal protein L32

Chain 27

50S ribosomal protein L34

Chain 2E

50S ribosomal protein L3

Chain 2W

50S ribosomal protein L22

Chain 2z

Api137 Antimicrobial Peptide