HL_9D7T_154

3D structure

PDB id

9D7T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with Api137 antimicrobial peptide, mRNA, A-site release factor 1, and deacylated P-site and E-site tRNAphe at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CUAAAAGGUAACG

Length

13 nucleotides

Bulged bases

9D7T|1|2A|A|2268, 9D7T|1|2A|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9D7T_154 not in the Motif Atlas

Homologous match to HL_9DFE_052

Geometric discrepancy: 0.0758

The information below is about HL_9DFE_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91939.2

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

8

Unit IDs

9D7T|1|2A|C|2264
9D7T|1|2A|U|2265
9D7T|1|2A|A|2266
9D7T|1|2A|A|2267
9D7T|1|2A|A|2268
9D7T|1|2A|A|2269
9D7T|1|2A|G|2270
9D7T|1|2A|G|2271
9D7T|1|2A|U|2272
9D7T|1|2A|A|2273
9D7T|1|2A|A|2274
9D7T|1|2A|C|2275
9D7T|1|2A|G|2276

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 20

50S ribosomal protein L27

Chain 2Q

50S ribosomal protein L16