HL_9D89_001

3D structure

PDB id

9D89 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosomal subunit in complex with PrAMP rumicidin-2 (focused refinement)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.95 Å

Loop

Sequence

UGCUAAUCUG

Length

10 nucleotides

Bulged bases

9D89|1|D|G|60

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9D89_001 not in the Motif Atlas

Homologous match to HL_4WF9_067

Geometric discrepancy: 0.4789

The information below is about HL_4WF9_067

Detailed Annotation

Pseudoknot with intercalation

Broad Annotation

No text annotation

Motif group

HL_17803.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

9D89|1|D|U|59
9D89|1|D|G|60
9D89|1|D|C|61
9D89|1|D|U|62
9D89|1|D|A|63
9D89|1|D|A|64
9D89|1|D|U|65
9D89|1|D|C|66
9D89|1|D|U|67
9D89|1|D|G|68

Current chains

Chain D

23S rRNA

Nearby chains

Chain K

Large ribosomal subunit protein uL23

Chain x

Large ribosomal subunit protein uL29