HL_9D89_028

3D structure

PDB id

9D89 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosomal subunit in complex with PrAMP rumicidin-2 (focused refinement)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.95 Å

Loop

Sequence

UGUGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9D89_028 not in the Motif Atlas

Homologous match to HL_5J7L_164

Geometric discrepancy: 0.0797

The information below is about HL_5J7L_164

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

9D89|1|D|U|1224
9D89|1|D|G|1225
9D89|1|D|U|1226
9D89|1|D|G|1227
9D89|1|D|A|1228
9D89|1|D|G|1229

Current chains

Chain D

23S rRNA

Nearby chains

Chain I

50S ribosomal protein L15

Chain p

Large ribosomal subunit protein bL20

Chain q

50S ribosomal protein L21