HL_9D89_029

3D structure

PDB id

9D89 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosomal subunit in complex with PrAMP rumicidin-2 (focused refinement)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.95 Å

Loop

Sequence

GUGAAAAGC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9D89_029 not in the Motif Atlas

Homologous match to HL_5J7L_165

Geometric discrepancy: 0.0792

The information below is about HL_5J7L_165

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_28252.8

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

140

Unit IDs

9D89|1|D|G|1283
9D89|1|D|U|1284
9D89|1|D|G|1285
9D89|1|D|A|1286
9D89|1|D|A|1287
9D89|1|D|A|1288
9D89|1|D|A|1289
9D89|1|D|G|1290
9D89|1|D|C|1291

Current chains

Chain D

23S rRNA

Nearby chains

Chain J

50S ribosomal protein L17

Chain M

50S ribosomal protein L32

Chain r

50S ribosomal protein L22