HL_9D89_033

3D structure

PDB id

9D89 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosomal subunit in complex with PrAMP rumicidin-2 (focused refinement)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.95 Å

Loop

Sequence

CGACGGUUG

Length

9 nucleotides

Bulged bases

9D89|1|D|A|1455, 9D89|1|D|C|1456

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9D89_033 not in the Motif Atlas

Homologous match to HL_5J7L_169

Geometric discrepancy: 0.1078

The information below is about HL_5J7L_169

Detailed Annotation

Mini UNCG with extended bulge

Broad Annotation

Mini UNCG with extended bulge

Motif group

HL_22622.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

9D89|1|D|C|1453
9D89|1|D|G|1454
9D89|1|D|A|1455
9D89|1|D|C|1456
9D89|1|D|G|1457
9D89|1|D|G|1458
9D89|1|D|U|1459
9D89|1|D|U|1460
9D89|1|D|G|1461

Current chains

Chain D

23S rRNA

Nearby chains

Chain J

50S ribosomal protein L17