HL_9D89_042

3D structure

PDB id

9D89 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosomal subunit in complex with PrAMP rumicidin-2 (focused refinement)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.95 Å

Loop

Sequence

UUUAUUAAAAA

Length

11 nucleotides

Bulged bases

9D89|1|D|A|1782, 9D89|1|D|U|1783, 9D89|1|D|U|1784, 9D89|1|D|A|1788

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9D89_042 not in the Motif Atlas

Homologous match to HL_5J7L_178

Geometric discrepancy: 0.042

The information below is about HL_5J7L_178

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01962.2

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

6

Unit IDs

9D89|1|D|U|1779
9D89|1|D|U|1780
9D89|1|D|U|1781
9D89|1|D|A|1782
9D89|1|D|U|1783
9D89|1|D|U|1784
9D89|1|D|A|1785
9D89|1|D|A|1786
9D89|1|D|A|1787
9D89|1|D|A|1788
9D89|1|D|A|1789

Current chains

Chain D

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L34

Chain F

50S ribosomal protein L2

Chain T

Rumicidin-2 (12-27)