HL_9D89_045

3D structure

PDB id

9D89 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosomal subunit in complex with PrAMP rumicidin-2 (focused refinement)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.95 Å

Loop

Sequence

G(PSU)AAC(3TD)A(PSU)AAC

Length

11 nucleotides

Bulged bases

9D89|1|D|A|1917

QA status

Modified nucleotides: PSU, 3TD

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9D89_045 not in the Motif Atlas

Homologous match to HL_9DFE_046

Geometric discrepancy: 0.1739

The information below is about HL_9DFE_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82185.1

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

9D89|1|D|G|1914
9D89|1|D|PSU|1915
9D89|1|D|A|1916
9D89|1|D|A|1917
9D89|1|D|C|1918
9D89|1|D|3TD|1919
9D89|1|D|A|1920
9D89|1|D|PSU|1921
9D89|1|D|A|1922
9D89|1|D|A|1923
9D89|1|D|C|1924

Current chains

Chain D

23S rRNA

Nearby chains