HL_9D89_046

3D structure

PDB id

9D89 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosomal subunit in complex with PrAMP rumicidin-2 (focused refinement)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.95 Å

Loop

Sequence

GGUAAGUUC

Length

9 nucleotides

Bulged bases

9D89|1|D|U|1959

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9D89_046 not in the Motif Atlas

Homologous match to HL_5J7L_182

Geometric discrepancy: 0.0457

The information below is about HL_5J7L_182

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20167.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

9D89|1|D|G|1953
9D89|1|D|G|1954
9D89|1|D|U|1955
9D89|1|D|A|1956
9D89|1|D|A|1957
9D89|1|D|G|1958
9D89|1|D|U|1959
9D89|1|D|U|1960
9D89|1|D|C|1961

Current chains

Chain D

23S rRNA

Nearby chains

Chain j

50S ribosomal protein L14