HL_9D89_050

3D structure

PDB id

9D89 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosomal subunit in complex with PrAMP rumicidin-2 (focused refinement)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.95 Å

Loop

Sequence

CUAAAGAGUAACG

Length

13 nucleotides

Bulged bases

9D89|1|D|A|2272, 9D89|1|D|C|2279

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9D89_050 not in the Motif Atlas

Homologous match to HL_5J7L_187

Geometric discrepancy: 0.0356

The information below is about HL_5J7L_187

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91939.2

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

8

Unit IDs

9D89|1|D|C|2268
9D89|1|D|U|2269
9D89|1|D|A|2270
9D89|1|D|A|2271
9D89|1|D|A|2272
9D89|1|D|G|2273
9D89|1|D|A|2274
9D89|1|D|G|2275
9D89|1|D|U|2276
9D89|1|D|A|2277
9D89|1|D|A|2278
9D89|1|D|C|2279
9D89|1|D|G|2280

Current chains

Chain D

23S rRNA

Nearby chains

Chain E

5S ribosomal RNA; 5S rRNA

Chain L

50S ribosomal protein L27

Chain l

50S ribosomal protein L16