HL_9D89_053

3D structure

PDB id

9D89 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosomal subunit in complex with PrAMP rumicidin-2 (focused refinement)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.95 Å

Loop

Sequence

UGACGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9D89_053 not in the Motif Atlas

Homologous match to HL_5J7L_190

Geometric discrepancy: 0.0743

The information below is about HL_5J7L_190

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

9D89|1|D|U|2360
9D89|1|D|G|2361
9D89|1|D|A|2362
9D89|1|D|C|2363
9D89|1|D|G|2364
9D89|1|D|G|2365

Current chains

Chain D

23S rRNA

Nearby chains

Chain B

50S ribosomal protein L35

Chain I

50S ribosomal protein L15

Chain L

50S ribosomal protein L27