HL_9D89_057

3D structure

PDB id

9D89 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosomal subunit in complex with PrAMP rumicidin-2 (focused refinement)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.95 Å

Loop

Sequence

UGAAGUAG

Length

8 nucleotides

Bulged bases

9D89|1|D|G|2533

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9D89_057 not in the Motif Atlas

Homologous match to HL_5J7L_194

Geometric discrepancy: 0.0747

The information below is about HL_5J7L_194

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_31585.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

20

Unit IDs

9D89|1|D|U|2532
9D89|1|D|G|2533
9D89|1|D|A|2534
9D89|1|D|A|2535
9D89|1|D|G|2536
9D89|1|D|U|2537
9D89|1|D|A|2538
9D89|1|D|G|2539

Current chains

Chain D

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L36

Chain g

Large ribosomal subunit protein uL6