HL_9D89_062

3D structure

PDB id

9D89 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosomal subunit in complex with PrAMP rumicidin-2 (focused refinement)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.95 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

9D89|1|D|G|2755, 9D89|1|D|C|2759

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9D89_062 not in the Motif Atlas

Homologous match to HL_5J7L_199

Geometric discrepancy: 0.0494

The information below is about HL_5J7L_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

9D89|1|D|C|2749
9D89|1|D|U|2750
9D89|1|D|G|2751
9D89|1|D|A|2752
9D89|1|D|A|2753
9D89|1|D|A|2754
9D89|1|D|G|2755
9D89|1|D|C|2756
9D89|1|D|A|2757
9D89|1|D|U|2758
9D89|1|D|C|2759
9D89|1|D|U|2760
9D89|1|D|A|2761
9D89|1|D|A|2762
9D89|1|D|G|2763

Current chains

Chain D

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L36

Chain g

Large ribosomal subunit protein uL6

Chain i

Large ribosomal subunit protein uL13