HL_9D89_063

3D structure

PDB id

9D89 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosomal subunit in complex with PrAMP rumicidin-2 (focused refinement)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.95 Å

Loop

Sequence

CUUG

Length

4 nucleotides

Bulged bases

9D89|1|D|U|2801

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9D89_063 not in the Motif Atlas

Geometric match to HL_8VM8_002

Geometric discrepancy: 0.084

The information below is about HL_8VM8_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48778.2

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

9D89|1|D|C|2800
9D89|1|D|U|2801
9D89|1|D|U|2802
9D89|1|D|G|2803

Current chains

Chain D

23S rRNA

Nearby chains