HL_9DFC_047
3D structure
- PDB id
- 9DFC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.5 Å
Loop
- Sequence
- GGUAAGUUC
- Length
- 9 nucleotides
- Bulged bases
- 9DFC|1|1A|U|1955
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9DFC_047 not in the Motif Atlas
- Homologous match to HL_9DFE_047
- Geometric discrepancy: 0.0576
- The information below is about HL_9DFE_047
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_20167.2
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 10
Unit IDs
9DFC|1|1A|G|1949
9DFC|1|1A|G|1950
9DFC|1|1A|U|1951
9DFC|1|1A|A|1952
9DFC|1|1A|A|1953
9DFC|1|1A|G|1954
9DFC|1|1A|U|1955
9DFC|1|1A|U|1956
9DFC|1|1A|C|1957
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 1O
- 50S ribosomal protein L14
- Chain 1a
- Small subunit ribosomal RNA; SSU rRNA
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