HL_9DFE_132

3D structure

PDB id

9DFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin and protein Y at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CAUGGACG

Length

8 nucleotides

Bulged bases

9DFE|1|2A|A|1452, 9DFE|1|2A|U|1453

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9DFE_132 not in the Motif Atlas

Homologous match to HL_9DFE_035

Geometric discrepancy: 0.0989

The information below is about HL_9DFE_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_22622.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

9DFE|1|2A|C|1451
9DFE|1|2A|A|1452
9DFE|1|2A|U|1453
9DFE|1|2A|G|1455
9DFE|1|2A|G|1456
9DFE|1|2A|A|1457
9DFE|1|2A|C|1458
9DFE|1|2A|G|1459

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2R

50S ribosomal protein L17