HL_9DFE_149
3D structure
- PDB id
- 9DFE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin and protein Y at 2.60A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- CUAAAAGGUAACG
- Length
- 13 nucleotides
- Bulged bases
- 9DFE|1|2A|A|2268, 9DFE|1|2A|C|2275
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9DFE_149 not in the Motif Atlas
- Homologous match to HL_9DFE_052
- Geometric discrepancy: 0.0534
- The information below is about HL_9DFE_052
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_91939.2
- Basepair signature
- cWW-tSH-tHH-tWW-F-F-F
- Number of instances in this motif group
- 8
Unit IDs
9DFE|1|2A|C|2264
9DFE|1|2A|U|2265
9DFE|1|2A|A|2266
9DFE|1|2A|A|2267
9DFE|1|2A|A|2268
9DFE|1|2A|A|2269
9DFE|1|2A|G|2270
9DFE|1|2A|G|2271
9DFE|1|2A|U|2272
9DFE|1|2A|A|2273
9DFE|1|2A|A|2274
9DFE|1|2A|C|2275
9DFE|1|2A|G|2276
Current chains
- Chain 2A
- 23S Ribosomal RNA
Nearby chains
- Chain 20
- 50S ribosomal protein L27
- Chain 2B
- 5S ribosomal RNA; 5S rRNA
- Chain 2Q
- 50S ribosomal protein L16
- Chain 2Z
- 50S ribosomal protein L25
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