HL_9DOV_007

3D structure

PDB id

9DOV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

GUGAGAAUC

Length

9 nucleotides

Bulged bases

9DOV|1|A1|G|218, 9DOV|1|A1|A|219, 9DOV|1|A1|G|220

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9DOV_007 not in the Motif Atlas

Homologous match to HL_9PN5_007

Geometric discrepancy: 0.0546

The information below is about HL_9PN5_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27670.7

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

18

Unit IDs

9DOV|1|A1|G|216
9DOV|1|A1|U|217
9DOV|1|A1|G|218
9DOV|1|A1|A|219
9DOV|1|A1|G|220
9DOV|1|A1|A|221
9DOV|1|A1|A|222
9DOV|1|A1|U|223
9DOV|1|A1|C|224

Current chains

Chain A1

25S rRNA

Nearby chains

Chain A4

5.8S ribosomal RNA; 5.8S rRNA

Chain AC

Large ribosomal subunit protein uL4A

Chain AY

60S ribosomal protein L26-A