HL_9DOV_014

3D structure

PDB id

9DOV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

UCUUG(1MA)AAC(A2M)

Length

10 nucleotides

Bulged bases

9DOV|1|A1|C|648

QA status

Modified nucleotides: 1MA, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9DOV_014 not in the Motif Atlas

Homologous match to HL_9PN5_014

Geometric discrepancy: 0.056

The information below is about HL_9PN5_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33597.8

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

142

Unit IDs

9DOV|1|A1|U|640
9DOV|1|A1|C|641
9DOV|1|A1|U|642
9DOV|1|A1|U|643
9DOV|1|A1|G|644
9DOV|1|A1|1MA|645
9DOV|1|A1|A|646
9DOV|1|A1|A|647
9DOV|1|A1|C|648
9DOV|1|A1|A2M|649

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AB

60S ribosomal protein L3

Chain Aa

60S ribosomal protein L28

Chain Ae

Large ribosomal subunit protein eL32