HL_9DOV_022

3D structure

PDB id

9DOV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

CCUCAG

Length

6 nucleotides

Bulged bases

9DOV|1|A1|C|959, 9DOV|1|A1|A|962

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9DOV_022 not in the Motif Atlas

Homologous match to HL_9H3G_028

Geometric discrepancy: 0.2624

The information below is about HL_9H3G_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27530.4

Basepair signature

cWW-F-F

Number of instances in this motif group

12

Unit IDs

9DOV|1|A1|C|958
9DOV|1|A1|C|959
9DOV|1|A1|U|960
9DOV|1|A1|C|961
9DOV|1|A1|A|962
9DOV|1|A1|G|963

Current chains

Chain A1

25S rRNA

Nearby chains

Chain Aa

60S ribosomal protein L28

Chain Ab

Large ribosomal subunit protein eL29

Chain Ao

60S ribosomal protein L42-A