HL_9DOV_044

3D structure

PDB id

9DOV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

UCUAAUU(1MA)AAA

Length

11 nucleotides

Bulged bases

9DOV|1|A1|A|2138, 9DOV|1|A1|A|2139, 9DOV|1|A1|U|2140, 9DOV|1|A1|A|2144

QA status

Modified nucleotides: 1MA

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9DOV|1|A1|U|2135
9DOV|1|A1|C|2136
9DOV|1|A1|U|2137
9DOV|1|A1|A|2138
9DOV|1|A1|A|2139
9DOV|1|A1|U|2140
9DOV|1|A1|U|2141
9DOV|1|A1|1MA|2142
9DOV|1|A1|A|2143
9DOV|1|A1|A|2144
9DOV|1|A1|A|2145

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AA

60S ribosomal protein L2-A

Chain Aj

60S ribosomal protein L37-A