HL_9DOV_044
3D structure
- PDB id
- 9DOV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.49 Å
Loop
- Sequence
- UCUAAUU(1MA)AAA
- Length
- 11 nucleotides
- Bulged bases
- 9DOV|1|A1|A|2138, 9DOV|1|A1|A|2139, 9DOV|1|A1|U|2140, 9DOV|1|A1|A|2144
- QA status
- Modified nucleotides: 1MA
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9DOV_044 not in the Motif Atlas
- Homologous match to HL_9PN5_044
- Geometric discrepancy: 0.0396
- The information below is about HL_9PN5_044
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_87681.4
- Basepair signature
- cWW-tWH-tWH-F
- Number of instances in this motif group
- 11
Unit IDs
9DOV|1|A1|U|2135
9DOV|1|A1|C|2136
9DOV|1|A1|U|2137
9DOV|1|A1|A|2138
9DOV|1|A1|A|2139
9DOV|1|A1|U|2140
9DOV|1|A1|U|2141
9DOV|1|A1|1MA|2142
9DOV|1|A1|A|2143
9DOV|1|A1|A|2144
9DOV|1|A1|A|2145
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain AA
- 60S ribosomal protein L2-A
- Chain Aj
- 60S ribosomal protein L37-A
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